Molecular and in silico analyses for detection of Shiga toxin-producing Escherichia coli (STEC) and highly pathogenic enterohemorrhagic Escherichia coli (EHEC) using genetic markers located on plasmid, O Island 57 and O Island 71

Nemati, Ali; Askari Badouei, Mahdi; Hashemi Tabar, Gholamreza; Morabito, Stefano; Dadvar, Ali

doi:10.1186/s12917-024-04251-0

Table 2 Metadata of the 52 whole genomes of the top 7 (n = 40) and other important (n = 12) EHEC serotypes originating from HUS patients

From: Molecular and in silico analyses for detection of Shiga toxin-producing Escherichia coli (STEC) and highly pathogenic enterohemorrhagic Escherichia coli (EHEC) using genetic markers located on plasmid, O Island 57 and O Island 71

Strain	Pathotype	Serotype	Collection date	Location	ecf1	Z2098	Z2099	nleA	Accession number
SEH1101	EHEC	O26:H11	2011	Sweden	+	+	+	+	JABWFR000000000
SEH0404	EHEC	O26:H11	2004	Sweden	+	+	+	+	JABWEW000000000
SEH1407	EHEC	O26:H11	2014	Sweden	+	+	+	+	JABWGD000000000
SEH1004	EHEC	O26:H11	2010	Sweden	-	-	-	-	JABWFP000000000
FWSEC0003	EHEC	O45:H2	2019	Canada	+	+	+	-	CP031916
2011 C-4251	EHEC	O45:H2	2018	USA	+	+	+	-	CP027388
SJ7	EHEC	O45:H16	2020	USA	-	+	+	-	CP044315
SEH1403	EHEC	O103:H2	2014	Sweden	+	+	+	-	JABWFZ000000000
SEH0702	EHEC	O103:H8	2007	Sweden	+	-	+	+	JABWFJ000000000
2013 C-4225	EHEC	O103:H11	2018	USA	+	+	+	+	CP027578
2013 C-3264	EHEC	O103:H25	2018	USA	+	+	+	-	CP027544
SEH1201	EHEC	O111:H8	2012	Sweden	-	-	-	+	JABWFT000000000
SEH0801	EHEC	O111:H8	2008	Sweden	+	+	+	-	JABWFK000000000
SEH0601	EHEC	O121:H19	2006	Sweden	+	+	+	+	JABWFF000000000
SEH1301	EHEC	O121:H19	2013	Sweden	+	+	+	+	JABWFW000000000
SEH0504	EHEC	O121:H19	2005	Sweden	+	+	+	+	JABWFA000000000
SEH0301	EHEC	O121:H19	2003	Sweden	+	+	+	+	JABWER000000000
SEH9705	EHEC	O121:H19	1997	Sweden	+	+	+	+	JABWEN000000000
SEH1002	EHEC	O121:H19	2010	Sweden	+	+	+	+	JABWFN000000000
SEH1402	EHEC	O121:H19	2014	Sweden	+	+	+	+	JABWFY000000000
SEH9401	EHEC	O121:H19	1994	Sweden	+	+	+	+	JABWEH000000000
SEH1404	EHEC	O121:H19	2014	Sweden	+	+	+	+	JABWGA000000000
SEH1202	EHEC	O121:H19	2012	Sweden	+	+	+	+	JABWFU000000000
CFSAN004176	EHEC	O145:H25	2003	USA	-	-	+	-	CP014583
CFSAN004177	EHEC	O145:H25	2004	USA	-	-	+	-	CP014670
RM13514	EHEC	O145:H28	2010	USA	+	+	+	-	NZ_CP006027.1
RM13516	EHEC	O145:H28	2007	Belgium	+	+	+	-	NZ_CP006262.1
SEH1003	EHEC	O145:H28	2010	Sweden	+	+	+	-	JABWFO000000000
TW14359	EHEC	O157:H7	2006	USA	+	+	+	+	NC_013008.1
Sakai	EHEC	O157:H7	1996	Japan	+	+	+	+	NC_002695.1
Xuzhou21	EHEC	O157:H7	1999	China	+	+	+	+	NC_017906.1
SEH9901	EHEC	O157:H7	1999	Sweden	+	+	+	+	JABWEO000000000
SEH9701	EHEC	O157:H7	1997	Sweden	+	+	+	+	JABWEJ000000000
SEH0602	EHEC	O157:H7	2006	Sweden	+	+	+	+	JABWFG000000000
SEH9501	EHEC	O157:H7	1995	Sweden	+	+	+	+	JABWEI000000000
SEH0302	EHEC	O157:H7	2003	Sweden	+	+	+	+	JABWES000000000
SEH0507	EHEC	O157:H7	2005	Sweden	+	+	+	+	JABWFD000000000
SEH0202	EHEC	O157:H7	2002	Sweden	+	+	+	+	JABWEQ000000000
SEH0402	EHEC	O157:H7	2004	Sweden	+	+	+	+	JABWEU000000000
SEH1802	EHEC	O157:H7	2018	Sweden	+	+	+	+	JABWGI000000000
115,237	STEC	O10:H25	2015	Finland	+	-	-	-	JAKYSD000000000
54,748	STEC	O25:H4	2000	Finland	-	-	-	-	JAKYQQ000000000
93,628	STEC	O55:H7	2009	Finland	-	-	-	-	JAKYOF000000000
118,916	STEC	O55:H7	2016	Finland	-	-	-	-	JAKYRB000000000
SEH1401	EHEC	O59:H19	2014	Sweden	-	-	-	-	JABWFX000000000
94,076	STEC	O78:H4	2009	Finland	-	-	-	-	JAKYOE000000000
2011C_3493	EAHEC	O104:H4	2011	USA	-	-	-	-	NC_018658.1
SEH1203	EHEC	O109:H21	2012	Sweden	-	-	-	-	JABWFV000000000
105,246	STEC	O146:H28	2013	Finland	-	-	-	-	JAKYVV000000000
SEH1405	EHEC	O165:H25	2014	Sweden	+	-	+	-	JABWGB000000000
SEH1501	EHEC	O165:H25	2015	Sweden	+	-	+	-	JABWGE000000000
96,308	STEC	O182:H25	2010	Finland	+	+	+	-	JAKYOB000000000

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ISSN: 1746-6148

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