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Table 3 General genome features and assembly details of Thai F. oreochromis, F. covae, and F. davsii isolates and type strains used in genome comparative analysis

From: Comparative genomic analysis of Flavobacterium species causing columnaris disease of freshwater fish in Thailand: insights into virulence and resistance mechanisms

Species

Isolates no

Size (Mb)

G + C content (%)

Protein coding sequences

rRNA

Number of contigs/coverage

GenBank No

Reference

F. oreochromis

CNRT2201

3.39

29.90

2,978

5

87(256x)

GCA_045055375.1 a

 

F. oreochromis

KCRT1906

3.35

29.91

2,893

6

97(234x)

GCA_045055395.1 a

 

F. oreochromis

KCRT2301

3.53

30.03

3,150

3

105(205x)

GCA_045055415.1 a

 

F. oreochromis

KCRT2304

3.40

29.98

2,980

3

76(217x)

GCA_045055455.1 a

 

F. oreochromis

RCBRT1901

3.31

29.95

2,892

3

84(302x)

GCA_045055575.1 a

 

F. oreochromis

SKNRT2101

3.47

29.97

3,027

5

105(180x)

GCA_045055495.1 a

This study

F. oreochromis

UBRT2201

3.32

29.98

2,928

5

86(197x)

GCA_045055515.1 a

 

F. davisii

KCRT2007

3.58

31.60

2,953

11

423(410x)

GCA_045055305.1 a

 

F. covae

PCBSB2203

3.14

30.53

2,700

3

93(290x)

GCA_045055595.1 a

 

F. davisii

1215

3.34

30.5

2,949

4

376 (25.72x)

GCA_002204815.1

[24]

F. covae

CF1

3.09

30.5

2,647

4

423 (19.75x)

GCA_002204825.1

F. covae

1372

3.19

30.5

2,751

2

174 (23x)

GCA_002916835.1

F. covae

1362

3.16

30.5

2,725

3

166 (28.33x)

GCA_002204845.1

F. oreochromis

1214

3.38

29.5

3,019

4

145 (28.72x)

GCA_002204835.1

F. oreochromis

1201

3.36

30

2,982

3

265 (23x)

GCA_002916795.1

F. oreochromis

NK01

3.39

29.5

2,990

3

134 (11.47x)

GCA_002204895.1

F. covae

SP1809

3.19

30.5

2,801

4

124(287x)

GCA_011316685.1

[8]

F. covae

SP1802

3.19

30.5

2,801

5

118(256x)

GCA_011316625.1

F. oreochromis

CC1808

3.39

29.5

2,956

3

91(209x)

GCA_011316665.1

F. oreochromis

CC1803

3.39

29.5

2,955

3

89(227x)

GCA_011316565.1

F. oreochromis

CC1802

3.39

29.5

2,960

3

91(196x)

GCA_011316545.1

F. oreochromis

CC1805

3.39

29.5

2,958

3

88(214x)

GCA_011316575.1

F. covae

AL-02–36 T

3.40

31.0

3,249

26

1 (143x)

GCA_019565575.1

[13]

F. davisii

90–106 T

3.40

30.4

3,109

36

1 (306X)

GCA_019565505.1

F. oreochromis

Costa Rica 04–02-TNT

3.54

30.4

3,274

30

1 (138X)

GCA_019565455.1

  1. aGenomes sequenced in the present study, the superscripted letter “T” indicates the type strain
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BMC Veterinary Research

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