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Table 4 Mutations detected in the quinolone resistance-determining regions of gyrA, gyrB, parC, parE from type strains and twenty-two Thai F. oreochromis, F. covae, F. davsii isolates

From: Comparative genomic analysis of Flavobacterium species causing columnaris disease of freshwater fish in Thailand: insights into virulence and resistance mechanisms

Species

Isolates no

QR status

Mutation in QRDR

gyrA

gyrB

parC

parE

F. oreochromis

KCRT1906

WT

-

-

-

-

-

-

F. oreochromis

SKNRT2101

WT

-

-

-

-

-

-

F. oreochromis

UBRT2201

WT

-

-

-

-

-

-

F. oreochromis

KCRT2304

WT

-

-

-

-

-

-

F. oreochromis

RCBRT1901

NWT

Ser83Ala

-

-

-

His47Tyr

-

F. oreochromis

CNRT2201

NWT

Ser83Val

-

-

-

His47Tyr

-

F. oreochromis

KCRT2301

NWT

Ser83Phe

-

-

-

-

-

F. covae

PCBSB2203

NWT

Ser83Phe

Asp87Tyr

-

Gln458His

-

-

F. davisii

KCRT2007

WT

-

-

Asn439Ala

Gln458His

-

-

F. oreochromis

CC1802a

-

-

-

-

-

His47Tyr

-

F. oreochromis

CC1803a

-

-

-

-

-

His47Tyr

-

F. oreochromis

CC1805a

-

-

-

-

-

His47Tyr

-

F. oreochromis

CC1808a

-

-

-

-

-

His47Tyr

-

F. oreochromis

1214a

-

Ser83Ala

-

-

-

-

-

F. oreochromis

NK01a

-

Ser83Ala

-

-

-

His47Tyr

-

F. oreochromis

1201a

-

Ser83Ala

-

-

-

-

-

F. covae

CF1a

-

-

-

-

Gln458His

-

-

F. covae

1362a

-

-

-

-

Gln458His

-

-

F. covae

1372a

-

-

-

-

Gln458His

-

-

F. covae

SP1802a

-

Ser83Phe

-

-

Gln458His

-

-

F. covae

SP1809a

-

Ser83Phe

-

-

Gln458His

-

-

F. davisii

1215a

-

Ser83Ala

-

Asn439Ala

Gln458His

-

-

F. covae

AL-02–36 T

-

-

-

-

Gln458His

-

-

F. davisii

90–106 T

-

-

-

Asn439Ala

Gln458His

-

-

F. oreochromis

Costa Rica 04–02-TNT

-

-

-

-

-

-

-

  1. WT Wild-type, NWT Non-wild-type, the superscripted letter “T” indicates the type strain
  2. aGenome isolates from previous study [8, 24]