Table 1 Identified Toxoplasmosis-associated markers that Meet the LOD ≥ 5 threshold
Method | SNP ID | CHR | Marker position (bp) | QTN effect | LOD score | r2 (%) | MAF | Allele |
|---|---|---|---|---|---|---|---|---|
mrMLM | OAR1_259333832.1 | 1 | 259,333,832 | -0.101 | 5.929 | 6.561 | 0.260 | G |
FASTmrMLM | -0.084 | 6.417 | 4.394 | |||||
ISIS EM-BLASSO | -0.069 | 5.745 | 2.859 | |||||
ISIS EM-BLASSO | oar3_OAR1_166542341 | 1 | 166,542,341 | 0.098 | 7.357 | 5.239 | 0.190 | A |
ISIS EM-BLASSO | s18614.1 | 1 | 167,985,445 | -0.073 | 5.273 | 3.206 | 0.278 | G |
ISIS EM-BLASSO | Chr3:30289994 | 3 | 30,289,994 | 0.067 | 6.296 | 2.010 | 0.472 | A |
mrMLM | OAR3_178922031.1 | 3 | 166,445,638 | -0.089 | 5.120 | 4.995 | 0.237 | A |
FASTmrMLM | -0.077 | 5.374 | 3.637 | |||||
mrMLM | oar3_OAR4_22415561 | 4 | 22,415,561 | -0.086 | 5.007 | 4.489 | 0.370 | T |
ISIS EM-BLASSO | -0.067 | 7.297 | 2.537 | |||||
FASTmrMLM | s07968.1 | 5 | 68,321,164 | 0.064 | 5.279 | 2.513 | 0.343 | T |
ISIS EM-BLASSO | OAR8_53470280.1 | 8 | 53,470,280 | -0.056 | 5.196 | 1.607 | 0.446 | T |
mrMLM | OAR12_34325493.1 | 12 | 34,325,493 | -0.105 | 5.045 | 6.746 | 0.208 | T |
ISIS EM-BLASSO | -0.074 | 5.522 | 3.098 | |||||
mrMLM | OAR12_7879376.1 | 12 | 7,879,376 | -0.095 | 5.045 | 5.805 | 0.271 | T |
mrMLM | s24197.1 | 13 | 30,087,039 | 0.103 | 5.071 | 5.595 | 0.475 | T |
FASTmrMLM | 0.074 | 6.355 | 2.827 | |||||
pKWmEB | Chr14:60839209 | 14 | 60,839,209 | -0.171 | 5.718 | 3.925 | 0.318 | T |
pKWmEB | oar3_OAR15_33277533 | 15 | 33,277,533 | -0.176 | 5.367 | 4.006 | 0.223 | C |
ISIS EM-BLASSO | s50603.1 | 19 | 53,972,117 | 0.066 | 5.721 | 2.559 | 0.329 | T |
ISIS EM-BLASSO | oar3_OAR20_37409536 | 20 | 37,409,536 | -0.075 | 5.858 | 3.320 | 0.332 | T |
pKWmEB | OAR21_30666071.1 | 21 | 30,666,071 | -0.174 | 5.402 | 3.112 | 0.192 | A |