Table 2 Recombination breakpoints identified in PRRSV2/CN/G8/2018 and associated parental strains
Isolate | Breakpoint position in alignment | Major Parent | Minor Parent | P-value | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Beginning | Ending | RDP | GENECONV | Bootscan | MaxChi | Chimaera | SiScan | 3Seq | |||
PRRSV2/CN/G8/2018 | 694 | 2000 | NADC30 | JXA1 | 2.810 × 10− 107 | 2.693 × 10− 93 | 2.124 × 10− 106 | 2.491 × 10− 34 | 1.023 × 10− 23 | 8.159 × 10− 37 | 1.942 × 10− 14 |
12,317 | 13,614 | NADC30 | VR-2332 | 3.222 × 10− 54 | 6.137 × 10− 36 | 4.256 × 10− 53 | 1.694 × 10− 22 | 1.031 × 10− 24 | 9.501 × 10− 21 | 3.885 × 10− 15 | |
13,933 | 15,112 | NADC30 | QYYZ | 4.634 × 10− 42 | 1.463 × 10− 5 | 2.053 × 10− 36 | 2.741 × 10− 15 | 1.070 × 10− 8 | 4.580 × 10− 10 | 1.094 × 10− 8 | |