Rapid whole genome sequencing for AMR surveillance in low- and middle-income countries: Oxford Nanopore Technology reveals multidrug-resistant Enterobacter cloacae complex from dairy farms in Sri Lanka

Table 4 Summary of mobile genetic elements (MGEs) in four isolates identified via ISEScan and ISFinder

Isolate ID	Contig ID^a	Families of mobile genetic elements (E. value: < 1)
Strain 01	Contig 01_C	IS4 (n = 1), IS481 (n = 1)
Strain 02	Contig 01_P	IS5 (n = 1), IS6 (n = 1), ISL3 (n = 1), new (n = 1), Tn3 (n = 1)
	Contig 02_P	IS110 (n = 1), IS1380 (n = 1), IS3 (n = 4), IS5 (n = 1), IS6 (n = 4), ISNCY (n = 1), new (n = 1), Tn3 (n = 1)
	Contig 03_C	IS1 (n = 1), IS3 (n = 4)
Strain 03	Contig 01_C	IS1 (n = 1), IS3 (n = 3)
	Contig 02_P	IS110 (n = 1), IS1380 (n = 1), IS3 (n = 4), IS5 (n = 1), IS6 (n = 2), ISNCY (n = 1), new (n = 1), Tn3 (n = 1)
	Contig 03_P	IS5 (n = 1), IS6 (n = 1), ISL3 (n = 1), new (n = 1), IS30 (n = 1), Tn3 (n = 1)
Strain 04	Contig 02_C	IS1 (n = 1), IS3 (n = 4)
	Contig 05_P	IS110 (n = 1), IS1380 (n = 1), IS3 (n = 3), IS5 (n = 1), IS6 (n = 4), ISNCY (n = 1), new (n = 1), Tn3 (n = 1)
	Contig 06_P	IS5 (n = 1), IS6 (n = 1), ISL3 (n = 1), new (n = 1), Tn3 (n = 1)

^aContig ID represents chromosome (C) or plasmid (P), and n denotes the number of sequences within each mobile genetic element (MGE) family that produced significant alignments

ISSN: 1746-6148